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1

NDDVD: an integrated and manually curated Neurodegenerative Diseases Variation Database

Yang, Yang, Xu, Chen, Liu, Xingyun, Xu, Chao, Zhang, Yuanyuan, Shen, Li, Vihinen, Mauno, Shen, Bairong

Journal:

Year:

2018

Language:

english

File:

PDF, 580 KB

english, 2018

2

Bruton’s tyrosine kinase (Btk): function, regulation, and transformation with special emphasis on the PH domain

Abdalla J. Mohamed, Liang Yu, Carl-Magnus Bäckesjö, Leonardo Vargas, Rani Faryal, Alar Aints, Birger Christensson, Anna Berglöf, Mauno Vihinen, Beston F. Nore, C. I. Edvard Smith

Journal:

Immunological Reviews

Year:

2009

Language:

english

File:

PDF, 599 KB

english, 2009

3

XLA — studies on the BTK tyrosine kinase

C.I. Edvard Smith, Carl-Magnus Bäckesjö, Lars J. Brandén, Tahmina Islam, Pekka T. Mattsson, Abdalla J. Mohamed, Beston F. Nore, Vargas V. Leonardo, Mauno Vihinen

Journal:

Molecular Immunology

Year:

1998

File:

PDF, 251 KB

1998

4

An algorithm for simultaneous comparison of several sequences

Journal:

Year:

1988

Language:

english

File:

PDF, 278 KB

english, 1988

5

Innovation platforms: a tool to enhance small-scale farmer potential through co-creation

Sell, Mila, Vihinen, Hilkka, Gabiso, Galfato, Lindström, Kristina

Journal:

Development in Practice

Year:

2018

Language:

english

File:

PDF, 1.63 MB

english, 2018

6

X-linked agammaglobulinemia (XLA): A genetic tyrosine kinase (Btk) disease

Pekka T. Mattsson, Mauno Vihinen, C. I. Edvard Smith

Journal:

Year:

1996

Language:

english

File:

PDF, 1.30 MB

english, 1996

7

CMR 2005: 12.06: Ultra-small iron oxide nanoparticle (USPIO)-labeled baculoviruses as novel MRI agents for imaging viral vector biodistribution in vivo

J. Hakumäki, J. Räty, T. Wirth, T. Huhtala, T. Ihalainen, M. Vihinen-Ranta, A. Närvänen, S. Ylä-Herttuala

Journal:

Contrast Media & Molecular Imaging

Year:

2006

Language:

english

File:

PDF, 54 KB

english, 2006

8

KinMutBase: A registry of disease-causing mutations in protein kinase domains

Csaba Ortutay, Jouni Väliaho, Kaj Stenberg, Mauno Vihinen

Journal:

Year:

2005

Language:

english

File:

PDF, 385 KB

english, 2005

9

Classification of mismatch repair gene missense variants with PON-MMR

Heidi Ali, Ayodeji Olatubosun, Mauno Vihinen

Journal:

Year:

2012

Language:

english

File:

PDF, 248 KB

english, 2012

10

BTKbase: a database of XLA-causing mutations

Journal:

Immunology Today

Year:

1995

Language:

english

File:

PDF, 930 KB

english, 1995

11

Transient IR imaging of light and flexible microelectronic devices

Z. Radivojevic, I. Kassamakov, M. Oinonen, H. Saarikko, H. Seppanen, P. Vihinen

Journal:

Microelectronics Reliability

Year:

2006

Language:

english

File:

PDF, 534 KB

english, 2006

12

Genome wide analysis of pathogenic SH2 domain mutations

Ilkka Lappalainen, Janita Thusberg, Bairong Shen, Mauno Vihinen

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2008

Language:

english

File:

PDF, 465 KB

english, 2008

13

Accuracy of protein flexibility predictions

Mauno Vihinen, Esa Torkkila, Pentti Riikonen

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1994

Language:

english

File:

PDF, 949 KB

english, 1994

14

On preprocessing of protein sequences for neural network prediction of polyproline type II secondary structures

Markku Siermala, Martti Juhola, Mauno Vihinen

Journal:

Computers in Biology and Medicine

Year:

2001

Language:

english

File:

PDF, 164 KB

english, 2001

15

Bruton's tyrosine kinase: cell biology, sequence conservation, mutation spectrum, siRNA modifications, and expression profiling

Jessica M. Lindvall, K. Emelie M. Blomberg, Jouni Väliaho, Leonardo Vargas, Juhana E. Heinonen, Anna Berglöf, Abdalla J. Mohamed, Beston F. Nore, Mauno Vihinen, C. I. Edvard Smith

Journal:

Immunological Reviews

Year:

2005

Language:

english

File:

PDF, 5.11 MB

english, 2005

16

Microbial Amylolytic Enzyme

Vihinen, Mauno, Mantsiila, Pekka

Journal:

Critical Reviews in Biochemistry and Molecular Biology

Year:

1989

Language:

english

File:

PDF, 5.04 MB

english, 1989

17

How to evaluate performance of prediction methods? Measures and their interpretation in variation effect analysis

Journal:

Year:

2012

Language:

english

File:

PDF, 758 KB

english, 2012

18

[American Institute of Aeronautics and Astronautics 39th Aerospace Sciences Meeting and Exhibit - Reno,NV,U.S.A. (08 January 2001 - 11 January 2001)] 39th Aerospace Sciences Meeting and Exhibit - Vortex combustor concept for gas turbine engines

Roquemore, W., Shouse, Dale, Burrus, Dave, Johnson, Art, Cooper, Clayton, Duncan, Beverly, Hsu, K.-Y., Katta, V., Sturgess, G., Vihinen, Illari

Year:

2001

Language:

english

File:

PDF, 2.41 MB

english, 2001

19

Clarity and claims in variation/mutation databasing

Dalgleish, Raymond, Oetting, William S, Auerbach, Arleen D, Beckmann, Jacques S, Cambon-Thomsen, Anne, Devereau, Andrew, Greenblatt, Marc S, Patrinos, George P, Taylor, Graham R, Vihinen, Mauno, Brook

Journal:

Nature Biotechnology

Year:

2011

Language:

english

File:

PDF, 155 KB

english, 2011

20

Microstructure and corrosion behavior of high power diode laser deposited Inconel 625 coatings

Tuominen, J., Vuoristo, P., Mäntylä, T., Latokartano, J., Vihinen, J., Andersson, P. H.

Journal:

Journal of Laser Applications

Year:

2003

Language:

english

File:

PDF, 1.08 MB

english, 2003

21

PON-Sol: prediction of effects of amino acid substitutions on protein solubility

Yang, Yang, Niroula, Abhishek, Shen, Bairong, Vihinen, Mauno

Journal:

Year:

2016

Language:

english

File:

PDF, 169 KB

english, 2016

22

Classification of Amino Acid Substitutions in Mismatch Repair Proteins Using PON-MMR2

Niroula, Abhishek, Vihinen, Mauno

Journal:

Year:

2015

Language:

english

File:

PDF, 1004 KB

english, 2015

23

Diffusion through thin membranes: Modeling across scales

Aho, Vesa, Mattila, Keijo, Kühn, Thomas, Kekäläinen, Pekka, Pulkkinen, Otto, Minussi, Roberta Brondani, Vihinen-Ranta, Maija, Timonen, Jussi

Journal:

Physical Review E

Year:

2016

Language:

english

File:

PDF, 1.87 MB

english, 2016

24

Protoparvovirus Knocking at the Nuclear Door

Mäntylä, Elina, Kann, Michael, Vihinen-Ranta, Maija

Journal:

Year:

2017

Language:

english

File:

PDF, 463 KB

english, 2017

25

Variation benchmark datasets: update, criteria, quality and applications

Sarkar, Anasua, Yang, Yang, Vihinen, Mauno

Journal:

Year:

2020

Language:

english

File:

PDF, 427 KB

english, 2020

26

Functional effects of protein variants

Journal:

Year:

2021

File:

PDF, 2.16 MB

2021

27

The hsp150Δ-carrier confers secretion competence to the rat nerve growth factor receptor ectodomain in Saccharomyces cerevisiae

Simonen, Marjo, Vihinen, Helena, Jämsä, Eija, Arumäe, Urmas, Kalkkinen, Nisse, Makarow, Marja

Journal:

Year:

1996

Language:

english

File:

PDF, 798 KB

english, 1996

28

Thermal unfolding of small proteins with SH3 domain folding pattern

Stefan Knapp, Pekka T. Mattson, Petya Christova, Kurt D. Berndt, Andrej Karshikoff, Mauno Vihinen, C.I. Edvard Smith, Rudolf Ladenstein

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1998

Language:

english

File:

PDF, 344 KB

english, 1998

29

Registries of immunodeficiency patients and mutations

Ilkka Lappalainen, Juha Ollila, C. I. Edvard Smith, Mauno Vihinen

Journal:

Year:

1997

Language:

english

File:

PDF, 211 KB

english, 1997

30

Mutations of the human BTK gene coding for bruton tyrosine kinase in X-linked agammaglobulinemia

Mauno Vihinen, Sau-Ping Kwan, Tracy Lester, Hans D. Ochs, Igor Resnick, Jouni Väliaho, Mary Ellen Conley, C.I. Edvard Smith

Journal:

Year:

1999

Language:

english

File:

PDF, 237 KB

english, 1999

31

The Tec family of cytoplasmic tyrosine kinases: mammalian Btk, Bmx, Itk, Tec, Txk and homologs in other species

C.I. Edvard Smith, Tahmina C. Islam, Pekka T. Mattsson, Abdalla J. Mohamed, Beston F. Nore, Mauno Vihinen

Journal:

Year:

2001

Language:

english

File:

PDF, 549 KB

english, 2001

32

Interaction between Btk TH and SH3 domain

Michael P. Okoh, Mauno Vihinen

Journal:

Year:

2002

Language:

english

File:

PDF, 1.44 MB

english, 2002

33

Sentinel lymph node biopsy and survival in elderly patients with cutaneous melanoma

I. Koskivuo, M. Hernberg, P. Vihinen, S. Virolainen, L. Talve, M. Seppänen, T. Vahlberg, T. Jahkola

Journal:

British Journal of Surgery

Year:

2011

Language:

english

File:

PDF, 140 KB

english, 2011

34

Virtual bioinformatics distance learning suite

Martti Tolvanen, Mauno Vihinen

Journal:

Biochemistry and Molecular Biology Education

Year:

2004

Language:

english

File:

PDF, 87 KB

english, 2004

35

Association between high collagenase-3 expression levels and poor prognosis in patients with head and neck cancer

Marjaana Luukkaa, Pia Vihinen, Pauliina Kronqvist, Tero Vahlberg, Seppo Pyrhönen, Veli-Matti Kähäri, Reidar Grénman

Journal:

Year:

2006

Language:

english

File:

PDF, 458 KB

english, 2006

36

Mutations in severe combined immune deficiency (SCID) due to JAK3 deficiency

Luigi D. Notarangelo, Patrizia Mella, Alison Jones, Genevieve de Saint Basile, Gianfranco Savoldi, Treena Cranston, Mauno Vihinen, Richard Fabian Schumacher

Journal:

Year:

2001

Language:

english

File:

PDF, 407 KB

english, 2001

37

APECED-causing mutations in AIRE reveal the functional domains of the protein

Maria Halonen, Hannele Kangas, Taina Rüppell, Tanja Ilmarinen, Juha Ollila, Meelis Kolmer, Mauno Vihinen, Jorma Palvimo, Jani Saarela, Ismo Ulmanen, Petra Eskelin

Journal:

Year:

2004

Language:

english

File:

PDF, 603 KB

english, 2004

38

Bioinformatic analysis of protein structure–function relationships: case study of leukocyte elastase (ELA2) missense mutations

Janita Thusberg, Mauno Vihinen

Journal:

Year:

2006

Language:

english

File:

PDF, 805 KB

english, 2006

39

Immunodeficiency mutation databases (IDbases)

Hilkka Piirilä, Jouni Väliaho, Mauno Vihinen

Journal:

Year:

2006

Language:

english

File:

PDF, 263 KB

english, 2006

40

BTKbase: the mutation database for X-linked agammaglobulinemia

Jouni Väliaho, C.I. Edvard Smith, Mauno Vihinen

Journal:

Year:

2006

Language:

english

File:

PDF, 335 KB

english, 2006

41

Focus on immunogenetics: diagnosis, molecular genetics, mutations, and diseases

Journal:

Year:

2006

Language:

english

File:

PDF, 94 KB

english, 2006

42

Somatic mutation databases as tools for molecular epidemiology and molecular pathology of cancer: Proposed guidelines for improving data collection, distribution, and integration

M. Olivier, A. Petitjean, J. Teague, S. Forbes, J.K. Dunnick, J.T. den Dunnen, A. Langerød, J.M. Wilkinson, M. Vihinen, R.G.H. Cotton, P. Hainaut

Journal:

Year:

2009

Language:

english

File:

PDF, 197 KB

english, 2009

43

Pathogenic or not? And if so, then how? Studying the effects of missense mutations using bioinformatics methods

Janita Thusberg, Mauno Vihinen

Journal:

Year:

2009

Language:

english

File:

PDF, 367 KB

english, 2009

44

A novel mutation in CD40 and its functional characterization

Chun-Jian Qi, Lu Zheng, Hong-Bing Ma, Min Fei, Ke-Qing Qian, Bai-Rong Shen, Chang-Ping Wu, Mauno Vihinen, Xue-Guang Zhang

Journal:

Year:

2009

Language:

english

File:

PDF, 613 KB

english, 2009

45

Sharing data between LSDBs and central repositories

Johan T. den Dunnen, Rolf H. Sijmons, Paal S. Andersen, Mauno Vihinen, Jacques S. Beckmann, Sandro Rossetti, C. Conover Talbot Jr, Ross C. Hardison, Sue Povey, Richard G.H. Cotton

Journal:

Year:

2009

Language:

english

File:

PDF, 115 KB

english, 2009

46

The Human Variome Project (HVP) 2009 Forum “Towards Establishing Standards”

Heather J. Howard, Ourania Horaitis, Richard G.H. Cotton, Mauno Vihinen, Raymond Dalgleish, Peter Robinson, Anthony J. Brookes, Myles Axton, Robert Hoffmann, Sylvie Tuffery-Giraud

Journal:

Year:

2010

Language:

english

File:

PDF, 91 KB

english, 2010

47

Performance of protein stability predictors

Sofia Khan, Mauno Vihinen

Journal:

Year:

2010

Language:

english

File:

PDF, 307 KB

english, 2010

48

Performance of mutation pathogenicity prediction methods on missense variants

Janita Thusberg, Ayodeji Olatubosun, Mauno Vihinen

Journal:

Year:

2011

Language:

english

File:

PDF, 447 KB

english, 2011

49

Curating gene variant databases (LSDBs): Toward a universal standard

Jacopo Celli, Raymond Dalgleish, Mauno Vihinen, Peter E.M. Taschner, Johan T. den Dunnen

Journal:

Year:

2012

Language:

english

File:

PDF, 343 KB

english, 2012

50

Guidelines for establishing locus specific databases

Mauno Vihinen, Johan T. den Dunnen, Raymond Dalgleish, Richard G. H. Cotton

Journal:

Year:

2012

Language:

english

File:

PDF, 404 KB

english, 2012

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